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dmnfarrell

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Research Fellow UCD Veterinary School ORCID ID: 0000-0003-3020-7945

Funding Links: https://github.com/sponsors/dmnfarrell

GitHub Sponsors Profile

I am a computational biologist. I often make tools for microbial genomics mostly using Python. I have made command line tools for small RNA sequence analysis and epitope prediction.
In my spare time I am mainly working on a desktop application for tabular data analysis called Tablexplore. This is designed as an easy to use general tool for plotting and data cleaning and manipulation. It is at present in a working state and available for free with a GPL license. I would like to add more features.
I blog about my work and make tutorials and coding snippets at https://dmnfarrell.github.io/

Featured Works

dmnfarrell/pandastable

Table analysis in Tkinter using pandas DataFrames.

Language: Python - Stars: 646
dmnfarrell/epitopepredict

Python package and command line tool for epitope prediction

Language: Jupyter Notebook - Stars: 51
dmnfarrell/tablexplore

Table analysis and plotting application written in PySide2/PyQt5

Language: Python - Stars: 135
dmnfarrell/snipgenie

command line and desktop tool for microbial variant calling

Language: Jupyter Notebook - Stars: 8
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